Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs9754514 chr22:18441813 G/A 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs9782883 chr1:243892532 A/G 4.13E-6 492 31.27 28.93 37.58 KM Plot
PRAD rs9782958 chr1:243892972 C/G 1.87E-5 494 31.27 28.78 42.33 KM Plot
PRAD rs9849395 chr3:151089338 G/T 3.37E-5 489 17.9 28.63 31.25 KM Plot
PRAD rs985353 chr6:168109432 G/A 4.2E-10 487 31.65 25.67 21.97 KM Plot
PRAD rs9868840 chr3:151098218 G/C 3.14E-5 488 17.9 28.65 31.35 KM Plot
PRAD rs9885161 chr5:7318081 A/T 1.08E-8 489 30.9 30.93 10.07 KM Plot
PRAD rs9889426 chr17:58177884 A/C 1.76E-5 494 30.8 31 26.93 KM Plot
PRAD rs9895887 chr17:58169583 G/A 1.76E-5 494 30.87 30.6 26.93 KM Plot
PRAD rs9907660 chr17:58204847 A/G 9.12E-6 494 22.27 31 30.87 KM Plot
PRAD rs9973769 chr2:47170152 A/C 3.25E-6 490 30.8 32.4 36.77 KM Plot
PRAD rs9976832 chr21:36956081 C/T 7.67E-5 487 31.37 30.27 31.03 KM Plot
PRAD rs998439 chr9:138673302 C/G 2.06E-5 471 31.38 30.17 18.1 KM Plot
PRAD rs998441 chr9:138675257 C/T 3.53E-5 474 31.63 28.7 15.78 KM Plot
PRAD rs998442 chr9:138675252 G/T 3.53E-5 474 31.63 28.7 15.78 KM Plot